NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,852.8 |
| Mean read quality |
11.5 |
| Median read length |
3,485.0 |
| Median read quality |
12.9 |
| Number of reads |
20,063.0 |
| Read length N50 |
3,499.0 |
| STDEV read length |
1,455.2 |
| Total bases |
57,236,184.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20063 (100.0%) 57.2Mb |
| >Q7 |
20061 (100.0%) 57.2Mb |
| >Q10 |
17215 (85.8%) 51.1Mb |
| >Q12 |
12916 (64.4%) 38.9Mb |
| >Q15 |
2935 (14.6%) 8.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.3 (218) |
| 2 |
23.1 (100) |
| 3 |
21.9 (382) |
| 4 |
21.5 (370) |
| 5 |
21.3 (565) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45019 (8.3) |
| 2 |
23575 (8.2) |
| 3 |
18965 (11.8) |
| 4 |
16971 (12.9) |
| 5 |
16347 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot