NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,264.6 |
| Mean read quality |
11.5 |
| Median read length |
1,251.0 |
| Median read quality |
12.8 |
| Number of reads |
204,453.0 |
| Read length N50 |
1,496.0 |
| STDEV read length |
558.5 |
| Total bases |
258,553,912.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
204437 (100.0%) 258.6Mb |
| >Q7 |
204256 (99.9%) 258.5Mb |
| >Q10 |
179547 (87.8%) 229.5Mb |
| >Q12 |
131987 (64.6%) 169.8Mb |
| >Q15 |
17612 (8.6%) 20.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.7 (20) |
| 2 |
31.4 (20) |
| 3 |
30.8 (20) |
| 4 |
30.5 (21) |
| 5 |
30.4 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5008 (12.7) |
| 2 |
4690 (9.0) |
| 3 |
4240 (11.6) |
| 4 |
3922 (9.1) |
| 5 |
3921 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot