NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,279.8 |
| Mean read quality |
11.8 |
| Median read length |
1,262.0 |
| Median read quality |
13.1 |
| Number of reads |
199,117.0 |
| Read length N50 |
1,499.0 |
| STDEV read length |
550.4 |
| Total bases |
254,836,190.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
199091 (100.0%) 254.8Mb |
| >Q7 |
198964 (99.9%) 254.8Mb |
| >Q10 |
176985 (88.9%) 228.8Mb |
| >Q12 |
136955 (68.8%) 177.9Mb |
| >Q15 |
24839 (12.5%) 29.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.1 (20) |
| 2 |
31.6 (20) |
| 3 |
30.7 (20) |
| 4 |
30.6 (21) |
| 5 |
30.1 (12) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4381 (10.9) |
| 2 |
4159 (13.5) |
| 3 |
4145 (10.4) |
| 4 |
3828 (12.6) |
| 5 |
3817 (11.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,279.8 |
| Mean read quality |
11.8 |
| Median read length |
1,262.0 |
| Median read quality |
13.1 |
| Number of reads |
199,116.0 |
| Read length N50 |
1,499.0 |
| STDEV read length |
550.4 |
| Total bases |
254,836,178.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
199090 (100.0%) 254.8Mb |
| >Q7 |
198963 (99.9%) 254.8Mb |
| >Q10 |
176984 (88.9%) 228.8Mb |
| >Q12 |
136954 (68.8%) 177.9Mb |
| >Q15 |
24838 (12.5%) 29.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.1 (20) |
| 2 |
31.6 (20) |
| 3 |
30.7 (20) |
| 4 |
30.6 (21) |
| 5 |
30.0 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4381 (10.9) |
| 2 |
4159 (13.5) |
| 3 |
4145 (10.4) |
| 4 |
3828 (12.6) |
| 5 |
3817 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot