NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,530.7 |
| Mean read quality |
11.5 |
| Median read length |
3,480.0 |
| Median read quality |
13.1 |
| Number of reads |
28,678.0 |
| Read length N50 |
3,502.0 |
| STDEV read length |
1,440.6 |
| Total bases |
72,574,515.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
28678 (100.0%) 72.6Mb |
| >Q7 |
28666 (100.0%) 72.6Mb |
| >Q10 |
24045 (83.8%) 65.3Mb |
| >Q12 |
18702 (65.2%) 52.6Mb |
| >Q15 |
4778 (16.7%) 12.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
26.1 (165) |
| 2 |
24.2 (168) |
| 3 |
22.6 (212) |
| 4 |
22.5 (173) |
| 5 |
22.3 (180) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13232 (14.6) |
| 2 |
12435 (10.5) |
| 3 |
11953 (15.6) |
| 4 |
11539 (9.0) |
| 5 |
10923 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot