NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,895.4 |
| Mean read quality |
11.3 |
| Median read length |
3,482.0 |
| Median read quality |
12.7 |
| Number of reads |
6,578.0 |
| Read length N50 |
3,493.0 |
| STDEV read length |
1,239.6 |
| Total bases |
19,046,047.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6578 (100.0%) 19.0Mb |
| >Q7 |
6577 (100.0%) 19.0Mb |
| >Q10 |
5566 (84.6%) 16.7Mb |
| >Q12 |
4050 (61.6%) 12.3Mb |
| >Q15 |
574 (8.7%) 1.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (211) |
| 2 |
19.2 (236) |
| 3 |
18.0 (3536) |
| 4 |
17.9 (196) |
| 5 |
17.5 (823) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18509 (13.4) |
| 2 |
17914 (14.1) |
| 3 |
17390 (11.4) |
| 4 |
13493 (9.0) |
| 5 |
11840 (15.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot