NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,953.1 |
| Mean read quality |
11.4 |
| Median read length |
3,484.0 |
| Median read quality |
12.8 |
| Number of reads |
7,201.0 |
| Read length N50 |
3,495.0 |
| STDEV read length |
1,185.1 |
| Total bases |
21,265,319.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7201 (100.0%) 21.3Mb |
| >Q7 |
7200 (100.0%) 21.3Mb |
| >Q10 |
6088 (84.5%) 18.5Mb |
| >Q12 |
4501 (62.5%) 13.9Mb |
| >Q15 |
827 (11.5%) 2.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (154) |
| 2 |
19.6 (196) |
| 3 |
19.5 (229) |
| 4 |
19.3 (172) |
| 5 |
19.2 (142) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17722 (12.9) |
| 2 |
15490 (15.0) |
| 3 |
14596 (14.7) |
| 4 |
13756 (14.8) |
| 5 |
10825 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot