NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
311.0 |
| Mean read quality |
9.6 |
| Median read length |
293.0 |
| Median read quality |
10.3 |
| Number of reads |
78,985.0 |
| Read length N50 |
363.0 |
| STDEV read length |
173.7 |
| Total bases |
24,565,555.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
78980 (100.0%) 24.6Mb |
| >Q7 |
78621 (99.5%) 24.5Mb |
| >Q10 |
42215 (53.4%) 12.0Mb |
| >Q12 |
25653 (32.5%) 7.2Mb |
| >Q15 |
9168 (11.6%) 2.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
34.8 (10) |
| 2 |
32.1 (20) |
| 3 |
30.8 (19) |
| 4 |
30.8 (36) |
| 5 |
30.3 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14706 (7.6) |
| 2 |
3206 (8.1) |
| 3 |
2825 (12.8) |
| 4 |
2753 (12.6) |
| 5 |
2668 (8.9) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
311.0 |
| Mean read quality |
9.6 |
| Median read length |
293.0 |
| Median read quality |
10.3 |
| Number of reads |
78,983.0 |
| Read length N50 |
363.0 |
| STDEV read length |
173.7 |
| Total bases |
24,565,526.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
78978 (100.0%) 24.6Mb |
| >Q7 |
78619 (99.5%) 24.5Mb |
| >Q10 |
42213 (53.4%) 12.0Mb |
| >Q12 |
25651 (32.5%) 7.2Mb |
| >Q15 |
9166 (11.6%) 2.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.1 (20) |
| 2 |
30.8 (36) |
| 3 |
30.3 (20) |
| 4 |
30.0 (14) |
| 5 |
29.8 (38) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14706 (7.6) |
| 2 |
3206 (8.1) |
| 3 |
2825 (12.8) |
| 4 |
2753 (12.6) |
| 5 |
2668 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot