NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
330.4 |
| Mean read quality |
9.7 |
| Median read length |
300.0 |
| Median read quality |
10.3 |
| Number of reads |
112,189.0 |
| Read length N50 |
391.0 |
| STDEV read length |
199.0 |
| Total bases |
37,071,904.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
112182 (100.0%) 37.1Mb |
| >Q7 |
111590 (99.5%) 37.0Mb |
| >Q10 |
60067 (53.5%) 18.3Mb |
| >Q12 |
38914 (34.7%) 11.8Mb |
| >Q15 |
16231 (14.5%) 4.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
34.0 (64) |
| 2 |
33.9 (16) |
| 3 |
33.2 (14) |
| 4 |
32.6 (13) |
| 5 |
32.5 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20688 (8.5) |
| 2 |
7748 (7.7) |
| 3 |
5084 (7.9) |
| 4 |
3260 (8.7) |
| 5 |
2710 (12.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
330.5 |
| Mean read quality |
9.7 |
| Median read length |
300.0 |
| Median read quality |
10.3 |
| Number of reads |
112,184.0 |
| Read length N50 |
391.0 |
| STDEV read length |
198.9 |
| Total bases |
37,071,823.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
112177 (100.0%) 37.1Mb |
| >Q7 |
111585 (99.5%) 37.0Mb |
| >Q10 |
60062 (53.5%) 18.3Mb |
| >Q12 |
38909 (34.7%) 11.8Mb |
| >Q15 |
16226 (14.5%) 4.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
34.0 (64) |
| 2 |
32.5 (20) |
| 3 |
32.4 (20) |
| 4 |
32.2 (51) |
| 5 |
32.0 (21) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20688 (8.5) |
| 2 |
7748 (7.7) |
| 3 |
5084 (7.9) |
| 4 |
3260 (8.7) |
| 5 |
2710 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot