NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,548.3 |
| Mean read quality |
11.3 |
| Median read length |
3,473.0 |
| Median read quality |
12.7 |
| Number of reads |
36,343.0 |
| Read length N50 |
3,495.0 |
| STDEV read length |
1,369.2 |
| Total bases |
92,612,848.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
36343 (100.0%) 92.6Mb |
| >Q7 |
36341 (100.0%) 92.6Mb |
| >Q10 |
30256 (83.3%) 81.9Mb |
| >Q12 |
22070 (60.7%) 61.9Mb |
| >Q15 |
3444 (9.5%) 8.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.6 (171) |
| 2 |
22.7 (185) |
| 3 |
22.5 (178) |
| 4 |
22.2 (178) |
| 5 |
22.0 (153) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9849 (13.5) |
| 2 |
8132 (13.8) |
| 3 |
8098 (11.2) |
| 4 |
7050 (13.5) |
| 5 |
7046 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot