NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,676.8 |
| Mean read quality |
11.6 |
| Median read length |
3,483.0 |
| Median read quality |
13.2 |
| Number of reads |
24,544.0 |
| Read length N50 |
3,500.0 |
| STDEV read length |
1,329.8 |
| Total bases |
65,700,498.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24544 (100.0%) 65.7Mb |
| >Q7 |
24542 (100.0%) 65.7Mb |
| >Q10 |
21145 (86.2%) 59.5Mb |
| >Q12 |
16523 (67.3%) 47.8Mb |
| >Q15 |
3707 (15.1%) 10.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.0 (169) |
| 2 |
24.5 (161) |
| 3 |
22.4 (214) |
| 4 |
22.3 (209) |
| 5 |
22.0 (185) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16513 (15.0) |
| 2 |
11099 (15.0) |
| 3 |
10926 (8.2) |
| 4 |
10863 (14.0) |
| 5 |
10628 (14.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot