NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,212.7 |
| Mean read quality |
11.7 |
| Median read length |
1,257.0 |
| Median read quality |
13.1 |
| Number of reads |
13,837.0 |
| Read length N50 |
1,519.0 |
| STDEV read length |
641.9 |
| Total bases |
16,780,292.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13833 (100.0%) 16.8Mb |
| >Q7 |
13810 (99.8%) 16.8Mb |
| >Q10 |
12118 (87.6%) 15.2Mb |
| >Q12 |
9559 (69.1%) 12.1Mb |
| >Q15 |
2127 (15.4%) 2.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.9 (20) |
| 2 |
30.8 (20) |
| 3 |
29.3 (11) |
| 4 |
29.1 (20) |
| 5 |
29.0 (19) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4481 (8.4) |
| 2 |
4297 (13.5) |
| 3 |
3879 (11.9) |
| 4 |
3802 (15.2) |
| 5 |
3796 (15.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot