NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,373.3 |
| Mean read quality |
11.8 |
| Median read length |
1,377.0 |
| Median read quality |
13.4 |
| Number of reads |
12,306.0 |
| Read length N50 |
1,557.0 |
| STDEV read length |
580.5 |
| Total bases |
16,900,442.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12302 (100.0%) 16.9Mb |
| >Q7 |
12275 (99.7%) 16.9Mb |
| >Q10 |
10694 (86.9%) 15.1Mb |
| >Q12 |
8718 (70.8%) 12.5Mb |
| >Q15 |
2289 (18.6%) 3.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.7 (20) |
| 2 |
29.1 (20) |
| 3 |
29.1 (20) |
| 4 |
28.8 (20) |
| 5 |
28.5 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4332 (8.2) |
| 2 |
4101 (10.2) |
| 3 |
3835 (14.3) |
| 4 |
3702 (15.1) |
| 5 |
3635 (15.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot