NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,548.3 |
| Mean read quality |
29.8 |
| Median read length |
6,265.0 |
| Median read quality |
40.7 |
| Number of reads |
735,702.0 |
| Read length N50 |
7,251.0 |
| STDEV read length |
2,545.4 |
| Total bases |
4,817,618,779.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
735702 (100.0%) 4817.6Mb |
| >Q7 |
735702 (100.0%) 4817.6Mb |
| >Q10 |
735702 (100.0%) 4817.6Mb |
| >Q12 |
735702 (100.0%) 4817.6Mb |
| >Q15 |
735702 (100.0%) 4817.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
93.0 (2874) |
| 2 |
93.0 (4055) |
| 3 |
93.0 (3885) |
| 4 |
93.0 (2934) |
| 5 |
93.0 (2705) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26197 (22.1) |
| 2 |
25209 (21.1) |
| 3 |
24833 (20.2) |
| 4 |
24654 (23.2) |
| 5 |
24499 (27.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot