NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 6,709.8
Mean read quality 30.5
Median read length 6,275.0
Median read quality 43.3
Number of reads 1,095,633.0
Read length N50 7,396.0
STDEV read length 2,696.1
Total bases 7,351,471,600.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 1095633 (100.0%) 7351.5Mb
>Q7 1095633 (100.0%) 7351.5Mb
>Q10 1095633 (100.0%) 7351.5Mb
>Q12 1095633 (100.0%) 7351.5Mb
>Q15 1095633 (100.0%) 7351.5Mb
Top 5 highest mean basecall quality scores and their read lengths
1 93.0 (2110)
2 93.0 (2795)
3 93.0 (4003)
4 93.0 (4297)
5 93.0 (3155)
Top 5 longest reads and their mean basecall quality score
1 33525 (20.5)
2 33362 (22.5)
3 33255 (22.6)
4 32727 (23.9)
5 32348 (29.8)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot