NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,035.6 |
| Mean read quality |
30.3 |
| Median read length |
4,849.0 |
| Median read quality |
43.2 |
| Number of reads |
717,519.0 |
| Read length N50 |
5,482.0 |
| STDEV read length |
1,800.5 |
| Total bases |
3,613,131,281.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
717519 (100.0%) 3613.1Mb |
| >Q7 |
717519 (100.0%) 3613.1Mb |
| >Q10 |
717519 (100.0%) 3613.1Mb |
| >Q12 |
717519 (100.0%) 3613.1Mb |
| >Q15 |
717519 (100.0%) 3613.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
93.0 (2554) |
| 2 |
93.0 (4373) |
| 3 |
93.0 (2568) |
| 4 |
93.0 (3348) |
| 5 |
93.0 (3702) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
31847 (20.0) |
| 2 |
24576 (23.5) |
| 3 |
21123 (35.4) |
| 4 |
20468 (26.2) |
| 5 |
20074 (27.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot