NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,237.2 |
| Mean read quality |
29.8 |
| Median read length |
6,010.0 |
| Median read quality |
40.9 |
| Number of reads |
939,988.0 |
| Read length N50 |
6,821.0 |
| STDEV read length |
2,264.4 |
| Total bases |
5,862,865,400.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
939988 (100.0%) 5862.9Mb |
| >Q7 |
939988 (100.0%) 5862.9Mb |
| >Q10 |
939988 (100.0%) 5862.9Mb |
| >Q12 |
939988 (100.0%) 5862.9Mb |
| >Q15 |
939988 (100.0%) 5862.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
93.0 (4674) |
| 2 |
93.0 (1534) |
| 3 |
93.0 (5636) |
| 4 |
93.0 (3659) |
| 5 |
93.0 (4727) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23662 (26.9) |
| 2 |
23055 (22.3) |
| 3 |
22929 (30.0) |
| 4 |
22740 (31.2) |
| 5 |
22489 (22.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot