NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,134.1 |
| Mean read quality |
29.7 |
| Median read length |
6,892.0 |
| Median read quality |
40.1 |
| Number of reads |
817,197.0 |
| Read length N50 |
7,985.0 |
| STDEV read length |
2,816.5 |
| Total bases |
5,829,966,240.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
817197 (100.0%) 5830.0Mb |
| >Q7 |
817197 (100.0%) 5830.0Mb |
| >Q10 |
817197 (100.0%) 5830.0Mb |
| >Q12 |
817197 (100.0%) 5830.0Mb |
| >Q15 |
817197 (100.0%) 5830.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
93.0 (4120) |
| 2 |
93.0 (3586) |
| 3 |
93.0 (3027) |
| 4 |
93.0 (3989) |
| 5 |
93.0 (3057) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36005 (20.3) |
| 2 |
32373 (22.0) |
| 3 |
30742 (25.6) |
| 4 |
30593 (21.8) |
| 5 |
27791 (29.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot