NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,692.5 |
| Mean read quality |
29.6 |
| Median read length |
6,456.0 |
| Median read quality |
39.8 |
| Number of reads |
955,510.0 |
| Read length N50 |
7,415.0 |
| STDEV read length |
2,531.6 |
| Total bases |
6,394,757,730.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
955510 (100.0%) 6394.8Mb |
| >Q7 |
955510 (100.0%) 6394.8Mb |
| >Q10 |
955510 (100.0%) 6394.8Mb |
| >Q12 |
955510 (100.0%) 6394.8Mb |
| >Q15 |
955510 (100.0%) 6394.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
93.0 (4130) |
| 2 |
93.0 (3758) |
| 3 |
93.0 (4539) |
| 4 |
93.0 (3220) |
| 5 |
93.0 (3073) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41230 (20.3) |
| 2 |
35512 (23.2) |
| 3 |
31728 (25.9) |
| 4 |
29539 (29.0) |
| 5 |
29262 (25.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot