NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
701.4 |
| Mean read quality |
9.0 |
| Median read length |
665.0 |
| Median read quality |
9.9 |
| Number of reads |
73.0 |
| Read length N50 |
886.0 |
| STDEV read length |
425.0 |
| Total bases |
51,205.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
73 (100.0%) 0.1Mb |
| >Q7 |
72 (98.6%) 0.1Mb |
| >Q10 |
30 (41.1%) 0.0Mb |
| >Q12 |
1 (1.4%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (378) |
| 2 |
11.6 (322) |
| 3 |
11.5 (1153) |
| 4 |
11.4 (958) |
| 5 |
11.0 (1417) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2053 (10.3) |
| 2 |
1708 (10.2) |
| 3 |
1536 (8.8) |
| 4 |
1486 (9.7) |
| 5 |
1417 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot