NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
832.3 |
| Mean read quality |
8.4 |
| Median read length |
664.0 |
| Median read quality |
9.1 |
| Number of reads |
225.0 |
| Read length N50 |
1,253.0 |
| STDEV read length |
648.4 |
| Total bases |
187,266.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
225 (100.0%) 0.2Mb |
| >Q7 |
222 (98.7%) 0.2Mb |
| >Q10 |
38 (16.9%) 0.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.8 (1370) |
| 2 |
11.0 (1127) |
| 3 |
11.0 (1567) |
| 4 |
11.0 (1479) |
| 5 |
10.9 (737) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3380 (10.6) |
| 2 |
3069 (9.5) |
| 3 |
2742 (8.7) |
| 4 |
2660 (9.4) |
| 5 |
2616 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot