NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
430.3 |
| Mean read quality |
9.5 |
| Median read length |
295.0 |
| Median read quality |
10.1 |
| Number of reads |
89.0 |
| Read length N50 |
590.0 |
| STDEV read length |
506.0 |
| Total bases |
38,295.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
89 (100.0%) 0.0Mb |
| >Q7 |
89 (100.0%) 0.0Mb |
| >Q10 |
46 (51.7%) 0.0Mb |
| >Q12 |
6 (6.7%) 0.0Mb |
| >Q15 |
1 (1.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (92) |
| 2 |
13.2 (702) |
| 3 |
12.9 (590) |
| 4 |
12.8 (237) |
| 5 |
12.7 (168) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3426 (11.1) |
| 2 |
2494 (10.1) |
| 3 |
2322 (9.6) |
| 4 |
1336 (10.1) |
| 5 |
1131 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot