NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
492.4 |
| Mean read quality |
10.7 |
| Median read length |
389.0 |
| Median read quality |
11.4 |
| Number of reads |
22,748.0 |
| Read length N50 |
553.0 |
| STDEV read length |
358.7 |
| Total bases |
11,201,913.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22748 (100.0%) 11.2Mb |
| >Q7 |
22748 (100.0%) 11.2Mb |
| >Q10 |
18628 (81.9%) 9.2Mb |
| >Q12 |
8029 (35.3%) 3.8Mb |
| >Q15 |
407 (1.8%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.7 (100) |
| 2 |
18.2 (146) |
| 3 |
18.1 (343) |
| 4 |
18.1 (263) |
| 5 |
18.0 (105) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5941 (13.4) |
| 2 |
5838 (10.8) |
| 3 |
5345 (11.6) |
| 4 |
4705 (11.7) |
| 5 |
4583 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot