NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
420.1 |
| Mean read quality |
10.8 |
| Median read length |
339.0 |
| Median read quality |
11.5 |
| Number of reads |
40,035.0 |
| Read length N50 |
456.0 |
| STDEV read length |
291.1 |
| Total bases |
16,818,716.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
40035 (100.0%) 16.8Mb |
| >Q7 |
40033 (100.0%) 16.8Mb |
| >Q10 |
33179 (82.9%) 14.1Mb |
| >Q12 |
15575 (38.9%) 6.5Mb |
| >Q15 |
1042 (2.6%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.6 (110) |
| 2 |
21.0 (160) |
| 3 |
20.9 (121) |
| 4 |
19.7 (151) |
| 5 |
19.1 (212) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7871 (10.8) |
| 2 |
4379 (12.4) |
| 3 |
4311 (12.8) |
| 4 |
4198 (9.6) |
| 5 |
4170 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot