NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
410.0 |
| Mean read quality |
10.9 |
| Median read length |
333.0 |
| Median read quality |
11.6 |
| Number of reads |
39,373.0 |
| Read length N50 |
446.0 |
| STDEV read length |
283.1 |
| Total bases |
16,143,429.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
39373 (100.0%) 16.1Mb |
| >Q7 |
39373 (100.0%) 16.1Mb |
| >Q10 |
33053 (83.9%) 13.6Mb |
| >Q12 |
16022 (40.7%) 6.5Mb |
| >Q15 |
1200 (3.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.7 (115) |
| 2 |
20.7 (106) |
| 3 |
20.4 (104) |
| 4 |
20.0 (102) |
| 5 |
19.4 (328) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3994 (11.0) |
| 2 |
3994 (11.8) |
| 3 |
3807 (11.8) |
| 4 |
3787 (11.7) |
| 5 |
3748 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot