NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
591.8 |
| Mean read quality |
10.8 |
| Median read length |
480.0 |
| Median read quality |
11.5 |
| Number of reads |
17,903.0 |
| Read length N50 |
684.0 |
| STDEV read length |
371.5 |
| Total bases |
10,595,604.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17903 (100.0%) 10.6Mb |
| >Q7 |
17903 (100.0%) 10.6Mb |
| >Q10 |
14882 (83.1%) 8.8Mb |
| >Q12 |
6472 (36.2%) 3.8Mb |
| >Q15 |
276 (1.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (149) |
| 2 |
18.4 (367) |
| 3 |
18.3 (380) |
| 4 |
18.3 (256) |
| 5 |
18.0 (323) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4272 (12.5) |
| 2 |
4165 (14.5) |
| 3 |
4112 (11.4) |
| 4 |
4003 (11.2) |
| 5 |
4003 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot