NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
574.3 |
| Mean read quality |
10.8 |
| Median read length |
427.0 |
| Median read quality |
11.6 |
| Number of reads |
22,192.0 |
| Read length N50 |
688.0 |
| STDEV read length |
432.7 |
| Total bases |
12,744,595.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22192 (100.0%) 12.7Mb |
| >Q7 |
22192 (100.0%) 12.7Mb |
| >Q10 |
18701 (84.3%) 10.8Mb |
| >Q12 |
8721 (39.3%) 5.0Mb |
| >Q15 |
498 (2.2%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (213) |
| 2 |
19.0 (317) |
| 3 |
18.9 (280) |
| 4 |
18.3 (200) |
| 5 |
18.3 (516) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5049 (11.3) |
| 2 |
4920 (10.0) |
| 3 |
4743 (12.5) |
| 4 |
4712 (11.0) |
| 5 |
4530 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot