NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
722.8 |
| Mean read quality |
10.2 |
| Median read length |
636.0 |
| Median read quality |
11.0 |
| Number of reads |
61,024.0 |
| Read length N50 |
802.0 |
| STDEV read length |
380.1 |
| Total bases |
44,105,897.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
61024 (100.0%) 44.1Mb |
| >Q7 |
61017 (100.0%) 44.1Mb |
| >Q10 |
46817 (76.7%) 34.1Mb |
| >Q12 |
11667 (19.1%) 8.1Mb |
| >Q15 |
48 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (88) |
| 2 |
17.3 (1324) |
| 3 |
16.9 (122) |
| 4 |
16.7 (346) |
| 5 |
16.4 (367) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6750 (11.6) |
| 2 |
4594 (10.7) |
| 3 |
4499 (10.8) |
| 4 |
4393 (9.1) |
| 5 |
4381 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot