NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
814.6 |
| Mean read quality |
10.2 |
| Median read length |
677.0 |
| Median read quality |
11.0 |
| Number of reads |
125,539.0 |
| Read length N50 |
975.0 |
| STDEV read length |
517.6 |
| Total bases |
102,264,138.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
125539 (100.0%) 102.3Mb |
| >Q7 |
125511 (100.0%) 102.3Mb |
| >Q10 |
97243 (77.5%) 80.1Mb |
| >Q12 |
23820 (19.0%) 17.9Mb |
| >Q15 |
122 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.3 (92) |
| 2 |
18.2 (144) |
| 3 |
17.1 (263) |
| 4 |
17.0 (95) |
| 5 |
16.7 (167) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6166 (10.8) |
| 2 |
6026 (10.4) |
| 3 |
5632 (10.3) |
| 4 |
5396 (11.7) |
| 5 |
5327 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot