NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
772.5 |
| Mean read quality |
9.9 |
| Median read length |
482.0 |
| Median read quality |
10.7 |
| Number of reads |
55,187.0 |
| Read length N50 |
1,142.0 |
| STDEV read length |
746.2 |
| Total bases |
42,633,126.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
55187 (100.0%) 42.6Mb |
| >Q7 |
55161 (100.0%) 42.6Mb |
| >Q10 |
38167 (69.2%) 29.2Mb |
| >Q12 |
8067 (14.6%) 4.1Mb |
| >Q15 |
83 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (173) |
| 2 |
17.7 (105) |
| 3 |
17.4 (97) |
| 4 |
17.0 (290) |
| 5 |
16.9 (289) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10888 (9.8) |
| 2 |
10091 (9.5) |
| 3 |
9613 (8.0) |
| 4 |
9494 (10.5) |
| 5 |
9367 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot