NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
177.7 |
| Mean read quality |
8.7 |
| Median read length |
147.0 |
| Median read quality |
9.3 |
| Number of reads |
4,641.0 |
| Read length N50 |
185.0 |
| STDEV read length |
177.8 |
| Total bases |
824,679.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4641 (100.0%) 0.8Mb |
| >Q7 |
4573 (98.5%) 0.8Mb |
| >Q10 |
1291 (27.8%) 0.2Mb |
| >Q12 |
108 (2.3%) 0.0Mb |
| >Q15 |
4 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (118) |
| 2 |
15.5 (61) |
| 3 |
15.2 (72) |
| 4 |
15.0 (77) |
| 5 |
14.6 (111) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5580 (10.3) |
| 2 |
4590 (10.0) |
| 3 |
4330 (9.8) |
| 4 |
4060 (10.4) |
| 5 |
3431 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot