NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
188.5 |
| Mean read quality |
9.0 |
| Median read length |
126.0 |
| Median read quality |
9.4 |
| Number of reads |
67.0 |
| Read length N50 |
221.0 |
| STDEV read length |
168.5 |
| Total bases |
12,628.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
67 (100.0%) 0.0Mb |
| >Q7 |
67 (100.0%) 0.0Mb |
| >Q10 |
24 (35.8%) 0.0Mb |
| >Q12 |
5 (7.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.4 (205) |
| 2 |
12.4 (137) |
| 3 |
12.3 (78) |
| 4 |
12.1 (137) |
| 5 |
12.1 (79) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
925 (8.9) |
| 2 |
892 (10.0) |
| 3 |
576 (10.5) |
| 4 |
566 (8.9) |
| 5 |
456 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot