NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
544.9 |
| Mean read quality |
9.3 |
| Median read length |
306.0 |
| Median read quality |
9.9 |
| Number of reads |
1,329.0 |
| Read length N50 |
988.0 |
| STDEV read length |
664.3 |
| Total bases |
724,189.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1329 (100.0%) 0.7Mb |
| >Q7 |
1324 (99.6%) 0.7Mb |
| >Q10 |
617 (46.4%) 0.3Mb |
| >Q12 |
79 (5.9%) 0.0Mb |
| >Q15 |
2 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (60) |
| 2 |
15.2 (113) |
| 3 |
15.0 (151) |
| 4 |
14.8 (51) |
| 5 |
14.6 (58) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10649 (10.2) |
| 2 |
4578 (10.1) |
| 3 |
4216 (9.5) |
| 4 |
3652 (11.7) |
| 5 |
3631 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot