NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
227.3 |
| Mean read quality |
9.9 |
| Median read length |
154.0 |
| Median read quality |
10.7 |
| Number of reads |
42,418.0 |
| Read length N50 |
275.0 |
| STDEV read length |
345.2 |
| Total bases |
9,639,833.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
42411 (100.0%) 9.6Mb |
| >Q7 |
42123 (99.3%) 9.6Mb |
| >Q10 |
28337 (66.8%) 6.8Mb |
| >Q12 |
9009 (21.2%) 1.9Mb |
| >Q15 |
429 (1.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.3 (72) |
| 2 |
20.9 (141) |
| 3 |
20.8 (59) |
| 4 |
20.3 (87) |
| 5 |
19.8 (89) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27957 (10.4) |
| 2 |
27458 (11.4) |
| 3 |
19286 (11.4) |
| 4 |
11881 (9.1) |
| 5 |
11660 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot