NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
254.1 |
| Mean read quality |
9.4 |
| Median read length |
118.0 |
| Median read quality |
10.1 |
| Number of reads |
4,631.0 |
| Read length N50 |
413.0 |
| STDEV read length |
1,232.2 |
| Total bases |
1,176,962.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4627 (99.9%) 1.2Mb |
| >Q7 |
4534 (97.9%) 1.2Mb |
| >Q10 |
2426 (52.4%) 0.7Mb |
| >Q12 |
646 (13.9%) 0.1Mb |
| >Q15 |
40 (0.9%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.2 (61) |
| 2 |
20.1 (51) |
| 3 |
18.3 (58) |
| 4 |
17.3 (74) |
| 5 |
16.9 (94) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43379 (9.8) |
| 2 |
41249 (11.8) |
| 3 |
26063 (10.3) |
| 4 |
18150 (10.5) |
| 5 |
15456 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot