NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
198.6 |
| Mean read quality |
9.8 |
| Median read length |
141.0 |
| Median read quality |
10.6 |
| Number of reads |
20,627.0 |
| Read length N50 |
218.0 |
| STDEV read length |
256.4 |
| Total bases |
4,097,425.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20621 (100.0%) 4.1Mb |
| >Q7 |
20421 (99.0%) 4.1Mb |
| >Q10 |
13380 (64.9%) 2.8Mb |
| >Q12 |
4360 (21.1%) 0.8Mb |
| >Q15 |
247 (1.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.9 (99) |
| 2 |
20.5 (14) |
| 3 |
19.8 (67) |
| 4 |
19.7 (78) |
| 5 |
19.3 (108) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12294 (8.4) |
| 2 |
12032 (10.3) |
| 3 |
11898 (9.2) |
| 4 |
7336 (8.5) |
| 5 |
6130 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot