NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
237.1 |
| Mean read quality |
10.0 |
| Median read length |
160.0 |
| Median read quality |
10.8 |
| Number of reads |
38,804.0 |
| Read length N50 |
284.0 |
| STDEV read length |
301.8 |
| Total bases |
9,200,002.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38800 (100.0%) 9.2Mb |
| >Q7 |
38582 (99.4%) 9.2Mb |
| >Q10 |
26441 (68.1%) 6.6Mb |
| >Q12 |
8613 (22.2%) 1.9Mb |
| >Q15 |
454 (1.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (142) |
| 2 |
19.8 (164) |
| 3 |
19.8 (83) |
| 4 |
19.3 (97) |
| 5 |
19.1 (61) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19786 (12.0) |
| 2 |
15870 (9.2) |
| 3 |
8745 (10.2) |
| 4 |
6618 (11.1) |
| 5 |
6598 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot