NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,383.2 |
| Mean read quality |
10.1 |
| Median read length |
1,164.0 |
| Median read quality |
10.9 |
| Number of reads |
75,443.0 |
| Read length N50 |
1,755.0 |
| STDEV read length |
870.4 |
| Total bases |
104,350,902.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
75443 (100.0%) 104.4Mb |
| >Q7 |
75433 (100.0%) 104.3Mb |
| >Q10 |
56554 (75.0%) 79.1Mb |
| >Q12 |
11510 (15.3%) 14.5Mb |
| >Q15 |
17 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (141) |
| 2 |
16.6 (192) |
| 3 |
16.3 (107) |
| 4 |
16.3 (112) |
| 5 |
16.0 (150) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8614 (11.1) |
| 2 |
7778 (11.8) |
| 3 |
7617 (8.2) |
| 4 |
7499 (9.4) |
| 5 |
7384 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot