NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
125.4 |
| Mean read quality |
8.9 |
| Median read length |
106.0 |
| Median read quality |
9.7 |
| Number of reads |
2,175.0 |
| Read length N50 |
124.0 |
| STDEV read length |
172.4 |
| Total bases |
272,850.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2174 (100.0%) 0.3Mb |
| >Q7 |
2087 (96.0%) 0.3Mb |
| >Q10 |
908 (41.7%) 0.1Mb |
| >Q12 |
227 (10.4%) 0.0Mb |
| >Q15 |
15 (0.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (104) |
| 2 |
17.8 (47) |
| 3 |
16.8 (125) |
| 4 |
15.8 (99) |
| 5 |
15.7 (58) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6071 (7.4) |
| 2 |
3473 (10.3) |
| 3 |
1707 (10.7) |
| 4 |
1538 (10.1) |
| 5 |
1495 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot