NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
146.1 |
| Mean read quality |
9.4 |
| Median read length |
112.0 |
| Median read quality |
10.2 |
| Number of reads |
10,039.0 |
| Read length N50 |
146.0 |
| STDEV read length |
194.5 |
| Total bases |
1,466,540.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10032 (99.9%) 1.5Mb |
| >Q7 |
9811 (97.7%) 1.4Mb |
| >Q10 |
5336 (53.2%) 0.8Mb |
| >Q12 |
1649 (16.4%) 0.2Mb |
| >Q15 |
158 (1.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.9 (56) |
| 2 |
21.3 (51) |
| 3 |
20.4 (50) |
| 4 |
20.4 (57) |
| 5 |
19.1 (55) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7058 (11.3) |
| 2 |
4698 (10.3) |
| 3 |
4182 (12.3) |
| 4 |
3723 (11.1) |
| 5 |
3426 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot