NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
122.5 |
| Mean read quality |
9.2 |
| Median read length |
107.0 |
| Median read quality |
9.9 |
| Number of reads |
5,583.0 |
| Read length N50 |
124.0 |
| STDEV read length |
75.0 |
| Total bases |
683,969.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5582 (100.0%) 0.7Mb |
| >Q7 |
5424 (97.2%) 0.7Mb |
| >Q10 |
2645 (47.4%) 0.3Mb |
| >Q12 |
755 (13.5%) 0.1Mb |
| >Q15 |
53 (0.9%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (42) |
| 2 |
18.5 (119) |
| 3 |
17.9 (88) |
| 4 |
17.2 (62) |
| 5 |
17.2 (61) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
1569 (11.6) |
| 2 |
1291 (10.7) |
| 3 |
1067 (9.6) |
| 4 |
1050 (12.6) |
| 5 |
1001 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot