NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
262.7 |
| Mean read quality |
9.5 |
| Median read length |
129.0 |
| Median read quality |
10.2 |
| Number of reads |
13,007.0 |
| Read length N50 |
421.0 |
| STDEV read length |
728.7 |
| Total bases |
3,416,732.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13007 (100.0%) 3.4Mb |
| >Q7 |
12865 (98.9%) 3.4Mb |
| >Q10 |
7272 (55.9%) 2.1Mb |
| >Q12 |
1793 (13.8%) 0.4Mb |
| >Q15 |
70 (0.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (30) |
| 2 |
18.4 (89) |
| 3 |
18.3 (83) |
| 4 |
18.1 (89) |
| 5 |
16.9 (91) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26205 (9.9) |
| 2 |
24118 (10.3) |
| 3 |
19075 (10.1) |
| 4 |
16351 (10.1) |
| 5 |
16274 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot