NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
104.5 |
| Mean read quality |
9.0 |
| Median read length |
99.0 |
| Median read quality |
9.6 |
| Number of reads |
5,385.0 |
| Read length N50 |
113.0 |
| STDEV read length |
78.2 |
| Total bases |
562,624.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5382 (99.9%) 0.6Mb |
| >Q7 |
5150 (95.6%) 0.5Mb |
| >Q10 |
2297 (42.7%) 0.2Mb |
| >Q12 |
753 (14.0%) 0.1Mb |
| >Q15 |
95 (1.8%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (49) |
| 2 |
18.6 (597) |
| 3 |
18.2 (55) |
| 4 |
17.9 (97) |
| 5 |
17.8 (57) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4140 (9.1) |
| 2 |
1984 (10.0) |
| 3 |
1324 (9.4) |
| 4 |
976 (9.7) |
| 5 |
600 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot