NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
818.4 |
| Mean read quality |
10.2 |
| Median read length |
651.0 |
| Median read quality |
11.0 |
| Number of reads |
101,383.0 |
| Read length N50 |
1,099.0 |
| STDEV read length |
567.0 |
| Total bases |
82,972,618.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
101383 (100.0%) 83.0Mb |
| >Q7 |
101359 (100.0%) 83.0Mb |
| >Q10 |
75947 (74.9%) 63.6Mb |
| >Q12 |
21985 (21.7%) 18.0Mb |
| >Q15 |
135 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (105) |
| 2 |
17.5 (340) |
| 3 |
16.8 (386) |
| 4 |
16.8 (116) |
| 5 |
16.6 (225) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5880 (11.8) |
| 2 |
5614 (7.6) |
| 3 |
5440 (10.7) |
| 4 |
4993 (11.4) |
| 5 |
4934 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot