NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
908.5 |
| Mean read quality |
10.2 |
| Median read length |
777.0 |
| Median read quality |
11.0 |
| Number of reads |
147,568.0 |
| Read length N50 |
1,075.0 |
| STDEV read length |
526.6 |
| Total bases |
134,060,913.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
147568 (100.0%) 134.1Mb |
| >Q7 |
147546 (100.0%) 134.1Mb |
| >Q10 |
112638 (76.3%) 103.5Mb |
| >Q12 |
31201 (21.1%) 27.5Mb |
| >Q15 |
110 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (142) |
| 2 |
17.3 (106) |
| 3 |
17.1 (124) |
| 4 |
16.9 (84) |
| 5 |
16.6 (126) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5730 (11.1) |
| 2 |
5673 (11.7) |
| 3 |
5553 (12.0) |
| 4 |
5501 (12.5) |
| 5 |
5444 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot