NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
413.7 |
| Mean read quality |
10.0 |
| Median read length |
314.0 |
| Median read quality |
10.8 |
| Number of reads |
6,232.0 |
| Read length N50 |
433.0 |
| STDEV read length |
378.8 |
| Total bases |
2,578,337.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6232 (100.0%) 2.6Mb |
| >Q7 |
6226 (99.9%) 2.6Mb |
| >Q10 |
4338 (69.6%) 1.8Mb |
| >Q12 |
1313 (21.1%) 0.5Mb |
| >Q15 |
28 (0.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (104) |
| 2 |
16.5 (140) |
| 3 |
16.3 (225) |
| 4 |
16.1 (105) |
| 5 |
16.1 (101) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5714 (9.4) |
| 2 |
5460 (10.2) |
| 3 |
4286 (12.9) |
| 4 |
4197 (11.7) |
| 5 |
3797 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot