NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
788.8 |
| Mean read quality |
10.0 |
| Median read length |
612.0 |
| Median read quality |
10.9 |
| Number of reads |
65,300.0 |
| Read length N50 |
967.0 |
| STDEV read length |
547.5 |
| Total bases |
51,508,646.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
65300 (100.0%) 51.5Mb |
| >Q7 |
65293 (100.0%) 51.5Mb |
| >Q10 |
47440 (72.6%) 37.8Mb |
| >Q12 |
11308 (17.3%) 8.3Mb |
| >Q15 |
25 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (92) |
| 2 |
16.3 (188) |
| 3 |
15.8 (339) |
| 4 |
15.7 (504) |
| 5 |
15.7 (393) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7010 (11.0) |
| 2 |
6829 (10.6) |
| 3 |
6309 (8.0) |
| 4 |
6276 (12.5) |
| 5 |
5537 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot