NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
704.1 |
| Mean read quality |
10.1 |
| Median read length |
578.0 |
| Median read quality |
10.9 |
| Number of reads |
43,497.0 |
| Read length N50 |
798.0 |
| STDEV read length |
436.1 |
| Total bases |
30,625,041.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
43497 (100.0%) 30.6Mb |
| >Q7 |
43480 (100.0%) 30.6Mb |
| >Q10 |
31819 (73.2%) 22.6Mb |
| >Q12 |
9266 (21.3%) 6.3Mb |
| >Q15 |
63 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (409) |
| 2 |
16.9 (318) |
| 3 |
16.7 (88) |
| 4 |
16.3 (249) |
| 5 |
16.3 (262) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5354 (11.5) |
| 2 |
5059 (11.0) |
| 3 |
4996 (11.2) |
| 4 |
4661 (9.5) |
| 5 |
4626 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot