NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
943.0 |
| Mean read quality |
10.0 |
| Median read length |
670.0 |
| Median read quality |
10.9 |
| Number of reads |
18,888.0 |
| Read length N50 |
1,372.0 |
| STDEV read length |
748.8 |
| Total bases |
17,811,406.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18888 (100.0%) 17.8Mb |
| >Q7 |
18886 (100.0%) 17.8Mb |
| >Q10 |
13385 (70.9%) 12.9Mb |
| >Q12 |
3666 (19.4%) 3.2Mb |
| >Q15 |
20 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (317) |
| 2 |
17.1 (278) |
| 3 |
16.6 (123) |
| 4 |
16.5 (199) |
| 5 |
16.0 (238) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7166 (8.4) |
| 2 |
6004 (11.4) |
| 3 |
5621 (11.9) |
| 4 |
5476 (9.9) |
| 5 |
5415 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot