NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
916.6 |
| Mean read quality |
10.0 |
| Median read length |
758.0 |
| Median read quality |
10.8 |
| Number of reads |
20,381.0 |
| Read length N50 |
1,147.0 |
| STDEV read length |
601.5 |
| Total bases |
18,682,074.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20381 (100.0%) 18.7Mb |
| >Q7 |
20377 (100.0%) 18.7Mb |
| >Q10 |
14883 (73.0%) 13.9Mb |
| >Q12 |
3284 (16.1%) 2.8Mb |
| >Q15 |
11 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.7 (114) |
| 2 |
17.8 (88) |
| 3 |
16.4 (117) |
| 4 |
15.8 (171) |
| 5 |
15.7 (114) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6160 (8.2) |
| 2 |
5891 (11.8) |
| 3 |
5601 (11.9) |
| 4 |
5278 (11.7) |
| 5 |
5148 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot