NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
630.0 |
| Mean read quality |
10.1 |
| Median read length |
525.0 |
| Median read quality |
11.0 |
| Number of reads |
44,319.0 |
| Read length N50 |
688.0 |
| STDEV read length |
428.7 |
| Total bases |
27,919,622.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
44319 (100.0%) 27.9Mb |
| >Q7 |
44293 (99.9%) 27.9Mb |
| >Q10 |
32748 (73.9%) 20.9Mb |
| >Q12 |
10122 (22.8%) 6.0Mb |
| >Q15 |
98 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (101) |
| 2 |
17.7 (107) |
| 3 |
17.1 (542) |
| 4 |
17.0 (309) |
| 5 |
17.0 (99) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6838 (11.6) |
| 2 |
6626 (11.5) |
| 3 |
6235 (8.8) |
| 4 |
6128 (9.9) |
| 5 |
5905 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot